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BasilLab
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========
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http://gitlab.tue.nl/STEM/basillab
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FYI (for your inspiration): a toolbox to get from raw MRI data to a 
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3D Abaqus FE model with as little user interaction as possible. 
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Originally written for specific in vivo experiments by Willeke Traa.
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See also: 
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Traa et al. MRI based 3D finite element modelling to investigate deep tissue injury, CMBBE, 2018. 
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https://dx.doi.org/10.1080/10255842.2018.1517868

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Traa et al. There is an individual tolerance to mechanical loading in compression induced deep tissue injury, Clin. Biomech., 2019.
https://doi.org/10.1016/j.clinbiomech.2019.02.015

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using & downloading
===================

You do not need (to run or use) Git to able to use basillab. You can 
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download your favourite version from http://gitlab.tue.nl/STEM/basillab
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Once downloaded, the code is yours to (ab)use to your liking (as 
long as you do not violate the GPL license).

When in doubt, just download the (latest) version from the/a *branch* 
called *master*. For a specific version, you can browse the *branches* 
and *tags* on the website.


compiling documentation from source
===================================

The main file to be compiled is BasilLab.tex

In order to compile from source, you may need some custom LaTeX-files 
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from stexmf: http://gitlab.tue.nl/STEM/stexmf
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copyright
=========

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Copyright (C) 2015 Mark C. van Turnhout & Willeke A. Traa, 
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Department of Biomedical Engineering, Eindhoven University of 
Technology.

Copyright (C) 2017 Soft Tissue Engineering and Mechanobiology (STEM) 
group,  Department of Biomedical Engineering, Eindhoven University of 
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Technology: https://www.tue.nl/stem
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This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
https://www.gnu.org/licenses/old-licenses/gpl-2.0.en.html

You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

warranty
========

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.