Commit 9c8e42db authored by matecellab's avatar matecellab
Browse files

small manual update

parent 11c64994
......@@ -64,6 +64,7 @@
% document specific conventions
\newcommand\gibbon{GIBB\textsl{On}}
\newcommand\warning{\marginpar{\center\includegraphics[width=1cm]{Exclamation.png}\\}}
\newcommand\adoc{\href{http://furnace.wfw.wtb.tue.nl:2080/v6.14/}{Abaqus documentation}}
% \renewcommand{\thesubsection}{\thesection.\alph{subsection}}
% the books notation conventions
%\renewcommand{\ten}[2][]{%
......@@ -151,7 +152,9 @@ All spatial dimensions of the FE model are in mm, both for input and output. Thu
E = 15.6\,\text{kPa} = 15600\,{\text{N}}/{\text{m}^2} = 0.0156\,{\text{N}}/{\text{mm}^2}
\end{equation}
And when you read the element volume from the Abaqus output, this volume is in mm\ap{3}.
And when you read the element volume from the Abaqus output, this volume is in mm\ap{3}.\\
\noindent See also section 1.2.2 `Conventions' in the Abaqus Analysis User's Guide of the \adoc .
\section{Directory structure}
......@@ -159,14 +162,14 @@ BasilLab requires knowledge on two directories: one \texttt{<MRI-root>} where th
The link between the unique raw MRI-data folder inside \texttt{<MRI-root>} and the unique folder for model data inside \texttt{<basilhome>} is \textsl{hard-coded} in \texttt{bas\_getMeta.m}. When you add animals/experiments or rename certain directories, you will have to adopt this file.
Each animal/experiment should have unique \textsl{numerical} identifier \texttt{<basilid>}. BasilLab calls \texttt{bas\_getMeta.m} to find out where the raw MRI-data is stored for \texttt{<basilid>}, and it will look for \texttt{<basilhome>/<basilid>/} to store and read modelling data. Currently, the unique \texttt{<basilid>} is the date of the experiment in \texttt{yymmdd}-format.\\
Each animal/experiment should have unique \textsl{numerical} identifier \texttt{<basilid>}. BasilLab calls \texttt{bas\_ getMeta.m} to find out where the raw MRI-data is stored for \texttt{<basilid>}, and it will look for \texttt{<basilhome>/<basilid>/} to store and read modelling data. Currently, the unique \texttt{<basilid>} is the date of the experiment in \texttt{yymmdd}-format.\\
Thus, for the experiment performed on June 11\ap{th} 2015
\begin{description}
\item[experiment identifier] \texttt{<basilid> = 140611}
\item[model data] is stored and sought in \texttt{<basilhome>/140611/}
\item[raw MRI-data] is stored in \texttt{<MRI-root>/140611.qd1/}
\item[the link] between \texttt{<basilid> = 140611} and raw MRI-data is stored in \texttt{<MRI-root>/140611.qd1/} is hard-coded in \texttt{bas\_getMeta.m}
\item[the link] between `\texttt{<basilid> = 140611}' and `raw MRI-data is stored in \texttt{<MRI-root>/140611.qd1/}' is hard-coded in \texttt{bas\_getMeta.m}
\end{description}
\noindent BasilLab provides \texttt{bas\_setMRIroot.m} to set \texttt{<MRI-root>} and \texttt{bas\_setDataRoot.m} to set \texttt{<basilhome>}.
......
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