Commit fcfb8557 authored by Turnhout, M.C. van's avatar Turnhout, M.C. van
Browse files

update URLs and ref to Willeke

parent fe327729
......@@ -101,3 +101,4 @@ slprj/
*.tdo
# repo specific ignores
documentation/BasilLab.pdf
BasilLab
========
http://mategit.wfw.wtb.tue.nl/STEM/basillab
http://gitlab.tue.nl/STEM/basillab
FYI (for your inspiration): a toolbox to get from raw MRI data to a
3D Abaqus FE model with as little user interaction as possible.
Originally written for specific in vivo experiments by Willeke Traa.
See also: Traa et al. MRI based 3D finite element modelling to investigate deep tissue injury, CMBBE, 2018.
See also:
Traa et al. MRI based 3D finite element modelling to investigate deep tissue injury, CMBBE, 2018.
https://dx.doi.org/10.1080/10255842.2018.1517868
Traa et al. There is an individual tolerance to mechanical loading in compression induced deep tissue injury, Clin. Biomech., 2019.
https://doi.org/10.1016/j.clinbiomech.2019.02.015
using & downloading
===================
You do not need (to run or use) Git to able to use basillab. You can
download your favourite version from http://mategit.wfw.wtb.tue.nl/STEM/basillab
download your favourite version from http://gitlab.tue.nl/STEM/basillab
Once downloaded, the code is yours to (ab)use to your liking (as
long as you do not violate the GPL license).
......@@ -30,7 +34,7 @@ compiling documentation from source
The main file to be compiled is BasilLab.tex
In order to compile from source, you may need some custom LaTeX-files
from stexmf: http://mategit.wfw.wtb.tue.nl/STEM/stexmf
from stexmf: http://gitlab.tue.nl/STEM/stexmf
copyright
=========
......
......@@ -315,4 +315,26 @@
timestamp = {2018.11.06},
}
@Article{Traa2019a,
author = {Traa, Willeke A. and \noopsort{Turnhout}van Turnhout, Mark C. and Nelissen, Jules L. and Strijkers, Gustav J. and Bader, Dan L. and Oomens, Cees W.J.},
title = {There is an individual tolerance to mechanical loading in compression induced deep tissue injury},
journal = {Clinical Biomechanics},
year = {2019},
abstract = {Background
Deep tissue injury is a type of pressure ulcer which originates subcutaneously due to sustained mechanical loading. The relationship between mechanical compression and damage development has been extensively studied in 2D. However, recent studies have suggested that damage develops beyond the site of indentation. The objective of this study was to compare mechanical loading conditions to the associated damage in 3D.
Methods
An indentation test was performed on the tibialis anterior muscle of rats (n = 39). Changes in the form of oedema and structural damage were monitored with MRI in an extensive region. The internal deformations were evaluated using MRI based 3D finite element models.
Findings
Damage propagates away from the loaded region. The 3D analysis indicates that there is a subject specific tolerance to compression induced deep tissue injury.
Interpretation
Individual tolerance is an important factor when considering the mechanical loading conditions which induce damage.},
doi = {10.1016/j.clinbiomech.2019.02.015},
keywords = {Finite element analysis, Deep tissue injury, Individual susceptibility, Pressure ulcers, MRI},
owner = {tue},
timestamp = {2019.03.02},
}
@Comment{jabref-meta: databaseType:bibtex;}
......@@ -7,7 +7,7 @@ Pressure ulcers are localised injuries to the skin and/or underlying tissue due
Until recently, (animal specific) FE analysis of the experiments was restricted to cross sectional (2D) FE models. In the current project \textsl{Non-invasive monitoring of deep tissue injury} \cite{Traa2015} the aim is to extend a previously developed cross sectional (2D) FE models \cite{Loerakker2010} to a FE model of the complete leg (i.e.\ 3D) \cite{Traa2014,Traa2019}. The first objective of these animal specific full leg 3D models is to assess the shortcomings of cross sectional 2D modelling (or: to assess what extra information can be obtained by switching to full leg 3D modelling).\\
\noindent BasilLab is a collection of scripts to facilitate the animal specific full leg 3D modelling of these experiments. BasilLab was (hacked and) used for the publications by Willeke Traa \textsl{et al.} \cite{Traa2019}.
\noindent BasilLab is a collection of scripts to facilitate the animal specific full leg 3D modelling of these experiments. BasilLab was (hacked and) used for the publications by Willeke Traa \textsl{et al.} \cite{Traa2019,Traa2019a}.
% \nocite{Loerakker2013,Loerakker2012,Loerakker2011,Loerakker2011a,Loerakker2010,Oomens2010,Nagel2009,Nierop2010,Ceelen2008,Ceelen2008a,Stekelenburg2006,Stekelenburg2006a,Stekelenburg2007}
......@@ -46,7 +46,7 @@ BasilLab is released under a \href{https://www.gnu.org/licenses/gpl-3.0.en.html}
Note that there is ABSOLUTELY NO WARRANTY; not even for FITNESS FOR A PARTICULAR PURPOSE, and certainly not for MERCHANTABILITY.\warning\\
\noindent BasilLab is available from the \href{mailto:m.c.v.turnhout@tue.nl}{author}. It is maintained in a Git repository that is hosted at \href{https://gitlab.tue.nl/STEM/basillab}{http://\-mategit.wfw.wtb.tue.nl/STEM/basillab}, where you can find the \href{https://gitlab.tue.nl/STEM/basillab/tree/master}{latest version}. The \href{mailto:m.c.v.turnhout@tue.nl}{author} welcomes your contributions.
\noindent BasilLab is available from the \href{mailto:m.c.v.turnhout@tue.nl}{author}. It is maintained in a Git repository that is hosted at \href{https://gitlab.tue.nl/STEM/basillab}{https://gitlab.tue.nl/STEM/basillab}, where you can find the \href{https://gitlab.tue.nl/STEM/basillab/tree/master}{latest version}. The \href{mailto:m.c.v.turnhout@tue.nl}{author} welcomes your contributions.
\section{Honour due and `backward compatibility'}
......
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