Commit 9cbb7d21 authored by Turnhout, M.C. van's avatar Turnhout, M.C. van
Browse files

update URLs

parent c355ef4c
......@@ -93,7 +93,7 @@ The benefit of this method is the larger freedom of geometries and meshes. You c
This method requires \texttt{param.buildFEM $\neq$ 'matlab'} and uses \TF{buildFEM} to write the python file that is fed to Abaqus so that Abaqus can write input file (so that \TF{runFEM} can feed the input file to Abaqus).\\
\noindent Note that this method depends on \texttt{aba\_readmesh.m} from \href{http://mategit.wfw.wtb.tue.nl/STEM/abalab}{abalab} for parsing of the input file for the mesh and the node sets. \warning
\noindent Note that this method depends on \texttt{aba\_readmesh.m} from \href{https://gitlab.tue.nl/STEM/abalab}{abalab} for parsing of the input file for the mesh and the node sets. \warning
\section{Parameters}
......
......@@ -62,7 +62,7 @@ labdef.FEMbuild = 'python';
%%%%%%%%%%%%%%%%%%%%%%% do not edit below this line %%%%%%%%%%%%%%%%%%%%%%%
% written by TF_labconfig: http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% written by TF_labconfig: https://gitlab.tue.nl/STEM/TFlab
% @ 13-Oct-2018 11:53:14
end
\end{lstlisting}
......@@ -229,7 +229,7 @@ labdef.simfailtol = 5;
labdef.fancyest = 0.500000;
labdef.instpath = '/home/mark/git/TFlab/';
labdef.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
labdef.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
labdef.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
labdef.TFlabBranch = 'testing';
labdef.TFlabVersion = '0.1+';
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
......@@ -284,7 +284,7 @@ labdef.simfailtol = 5;
labdef.fancyest = 0.500000;
labdef.instpath = '/home/mark/git/mylab/matlab/TFlab/';
labdef.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
labdef.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
labdef.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
labdef.TFlabBranch = 'testing';
labdef.TFlabVersion = '0.1+';
labdef.test = 1.000000;
......
......@@ -107,11 +107,11 @@
organization = {Soft Tissue Engineering \& Mechanobiology (STEM) Group, Department of Biomedical Engineering, Eindhoven University of Technology},
address = {Eindhoven, The Netherlands},
year = {2018},
note = {\href{https://bitbucket.org/matecellab/fiblab}{https://bitbucket.org/matecellab/fiblab}},
note = {\href{https://gitlab.tue.nl/STEM/fiblab}{https://gitlab.tue.nl/STEM/fiblab}},
abstract = {On the Intricacies and Difficulties of Data with Angles and Orientations, and of Our Thoughts and Musings Thereupon, with Proposals and Aids for Dealing with Such, and Containing Various Plates and Figures, All As a Service to the Diligent Researcher and Troubled Reader},
owner = {tue},
timestamp = {2018.05.10},
url = {https://bitbucket.org/matecellab/fiblab},
url = {https://gitlab.tue.nl/STEM/fiblab},
}
@InCollection{Adams1996,
......
......@@ -68,7 +68,7 @@
\usepackage{makeidx}
\newcommand\TF[1]{\texttt{TF\_#1.m}\index{TF_\#1.m@\texttt{TF\_#1.m}}}
\newcommand\param[1]{\texttt{param.#1}\index{param.\#1@\texttt{param.#1}}}
\newcommand\fiblab{\href{https://bitbucket.org/matecellab/fiblab/}{FibLab}\index{FibLab@\href{https://bitbucket.org/matecellab/fiblab/}{FibLab}}}
\newcommand\fiblab{\href{https://gitlab.tue.nl/STEM/fiblab/}{FibLab}\index{FibLab@\href{https://gitlab.tue.nl/STEM/fiblab/}{FibLab}}}
\newcommand\tflab{TFlab}
\newcommand\expname{\texttt{<experiment-name>.m}\index{<experiment-name>.m@\texttt{<experiment-name>.m}}}
\newcommand\paraminc{\texttt{param.inc}\index{(file)~param.inc@(file)~\texttt{param.inc}}}
......@@ -80,7 +80,7 @@
% document specific conventions
\newcommand\warning{\marginpar{\center\includegraphics[width=1cm]{Exclamation.png}\\}}
\newcommand\curver{\href{http://mategit.wfw.wtb.tue.nl/STEM/TFlab/tags}{v0.2}}
\newcommand\curver{\href{https://gitlab.tue.nl/STEM/TFlab/tags}{v0.2}}
%\newcommand\TF[1]{\texttt{TF\_#1}}
\renewcommand{\ten}[2][]{%
\hbox to 0pt{}\ap{#1}\boldsymbol{#2} }%
......@@ -91,14 +91,14 @@
%\cofeAm{0.5}{1.0}{125}{10cm}{-1cm}
%%\cofeBm{alpha}{scale}{angle}{xoff}{yoff}
\begin{center}
\Huge{\textbf{\href{http://mategit.wfw.wtb.tue.nl/STEM/TFlab}{TFlab}}}, \href{http://mategit.wfw.wtb.tue.nl/STEM/TFlab/commits/v0.2}{v0.2}\\
\Huge{\textbf{\href{https://gitlab.tue.nl/STEM/TFlab}{TFlab}}}, \href{https://gitlab.tue.nl/STEM/TFlab/tree/v0.2.1}{v0.2}\\
\Huge{\textbf{User manual}}\\
\mbox{}\\
\vfill
\includegraphics[width=\linewidth]{pics/megadef.png}\\
\vfill
\normalsize
\href{http://mategit.wfw.wtb.tue.nl/STEM/TFlab}{http://mategit.wfw.wtb.tue.nl/STEM/TFlab}
\href{https://gitlab.tue.nl/STEM/TFlab}{https://gitlab.tue.nl/STEM/TFlab}
\end{center}
%\cofeDm{0.7}{0.25}{-20}{4cm}{6cm}
%%\cofeCm{alpha}{scale}{angle}{xoff}{yoff}
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 06-May-2018 15:16:16
param.expname = 'estlinfancy_fancy';
param.nfilm = 8;
......@@ -20,7 +20,7 @@ param.simfailtol = 5;
param.fancyest = 1.000000e+00;
param.instpath = '/home/mark/git/mylab/matlab/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.imfiles = {'exp4_wt_0.tif'};
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 06-May-2018 13:55:28
param.expname = 'estlinfancy_lin';
param.nfilm = 8;
......@@ -20,7 +20,7 @@ param.simfailtol = 5;
param.fancyest = 0.000000e+00;
param.instpath = '/home/mark/git/mylab/matlab/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.imfiles = {'exp4_wt_0.tif'};
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 06-May-2018 14:45:37
param.expname = 'estlinfancy_linfancy';
param.nfilm = 8;
......@@ -20,7 +20,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/mylab/matlab/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.imfiles = {'exp4_wt_0.tif'};
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 06-May-2018 15:17:51
param.expname = 'exp4_wt_0';
param.nfilm = 8;
......@@ -24,7 +24,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.imfiles = {'exp4_wt_0.tif'};
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 15-May-2018 12:49:44
param.expname = 'imanatip_param';
param.nfilm = 8;
......@@ -20,7 +20,7 @@ param.simfailtol = 5.000000e+00;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/mylab/matlab/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.imfiles = {'exp4_wt_0.tif'};
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 16-Nov-2018 15:46:50
param.expname = 'isokappa_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 29-Apr-2018 15:29:39
param.expname = 'lRsigma_param';
param.nfilm = 1;
......@@ -20,7 +20,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 11:50:33
param.expname = 'lfmu_01_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 11:57:09
param.expname = 'lfmu_02_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:05:33
param.expname = 'lfmu_03_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:15:08
param.expname = 'lfmu_04_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:25:56
param.expname = 'lfmu_05_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:35:08
param.expname = 'lfmu_06_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:41:48
param.expname = 'lfmu_07_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:50:05
param.expname = 'lfmu_08_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
% written by TF_writeparam
% http://mategit.wfw.wtb.tue.nl/STEM/TFlab
% https://gitlab.tue.nl/STEM/TFlab
% @ 17-Nov-2018 12:56:11
param.expname = 'lfmu_09_param';
param.nfilm = 1;
......@@ -29,7 +29,7 @@ param.simfailtol = 5;
param.fancyest = 5.000000e-01;
param.instpath = '/home/mark/git/TFlab/';
param.intvars = {'refframe', 'nfilm', 'nframe', 'stack', 'curlcheck', 'simfailtol', 'maxinc', 'nelx', 'nely', 'nelz', 'nCPU', 'submit'};
param.TFlabUrl = 'http://mategit.wfw.wtb.tue.nl/STEM/TFlab';
param.TFlabUrl = 'https://gitlab.tue.nl/STEM/TFlab';
param.TFlabBranch = 'testing';
param.TFlabVersion = '0.1+';
param.length = [0.000000e+00, 0.000000e+00, 4.000000e+00];
......
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